Dr. Ravi Prabhakar More

 NGS Data Analysis Pipelines

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1. Snakemake-GATKv4.4-Snpeff-Workflow - Snakemake Workflow for BWA Alignment, GATK (V.4.4.0.0) Variant Calling with filtering, and Snpeff annotation using Conda environment for WGS/WES data analysis.

Github: https://github.com/ravimore8386/Snakemake-GATKv4.4-Snpeff-Workflow

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2. VarFilter-PD tool- VARiant FILTERing at Phenotype and Diagnosis level in pedigree using WGS/WES data

 Github: https://github.com/ravimore8386/VarFilter-PD

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3. Genomic-QC tool- WGS-based iPSC lines assessment  dx.doi.org/10.17504/protocols.io.vuae6se

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4. Whole Exome Sequencing (WES) analysis pipeline dx.doi.org/10.17504/protocols.io.vrhe536

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5. ADBS-BioinfoTools: The ADBS-BioinfoTools is a set of tools/scripts developed and being employed for analyzing

    whole exome/genome data generated from mental illness cohort cases and controls.

    Github: https://github.com/husaynahmed/ADBS-BioinfoTools 

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BIOINFORMATICS SOFTWARES DEVELOPED

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1. DNA BarID (DNA Barcode Identification): It is a QR encrypted signature-based software for taxonomic

    identification of Bacterial taxa using 16S rRNA gene sequences (http://www.neeri.res.in/DNA_BarID.htm).

    Github: https://github.com/ravimore8386/DNA_BarID 

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2. matK-QR Classifier: It is a QR encrypted signature-based software for plant species identification using matK

    gene sequences (http://www.neeri.res.in/matk_classifier/).

    Github: https://github.com/ravimore8386/matK-QR-classifier

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GENOME/METAGENOME DEPOSITED IN NCBI- GenBank

1. Mycobacterium tuberculosis strain C2, whole genome shotgun sequencing project, R. Kashyap, S. Bhullar, Ravi P. More, S. Puranik, HJ Purohit, G. Taori, H. Daginawala, GenBank accession no. JMEK00000000.

2. Activated sludge metagenome, whole genome shotgun (WGS) sequencing project, More RP, Mitra S, Raju SC, Kapley A and  Purohit HJ, GenBank accession number AERA00000000.1.